PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G09060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 924aa    MW: 101194 Da    PI: 7.1068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G09060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11751799355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  OPUNC03G09060.1 751 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 799
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.96188IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.901.1E-62099No hitNo description
SuperFamilySSF813835.89E-12331397IPR001810F-box domain
PROSITE profilePS5018110.955331377IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.7E-10334411No hitNo description
PfamPF006462.3E-4336378IPR001810F-box domain
SMARTSM002567.9E-4337377IPR001810F-box domain
SuperFamilySSF474595.23E-17746814IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-11746803No hitNo description
PROSITE profilePS5088815.796748798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17748815IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-9751799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10754804IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MKLRLRSMDQ RSGGGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQPRNPNPVV SSITGAVGPT  120
KSHAESGSSS SMPQASCVKP GLPVASDPHP PDVVMEEAFA AIKSKSSFVV GVMKREMENA  180
GGADGTIIYR LVVALHAALL DADFLSANPV GYRLQLPQDW SSGSFIPISM RYTLPELVEA  240
LPAVEEGMVA VLNYSLMGNF MMVYGHVPGA TSEVRRLCLE LPKLAPLLYL DSDEVSAAEE  300
REIHELWRVL KDEMCLPLMI SLCQLNNLSL PPCLMALPGD VKVKVLEFVR GVDLARVQCT  360
CKELRDLAAD DNLWKKKCEF NTQGEGSRVG RSWKERFGAA WKVSNNKRQK RVSPMFLNYG  420
WGNPYSPHGF PVIGGDSDML PFIGHPNLLG RSFGNQRRNI SPSCSFGGHR HNFFAYGLKT  480
KKEKEHDSDM RCTMCKCIYS DQRKVIGLAG KYIHDNYVQK AVAQPVHHYL VEFAVIAGWY  540
CTSYRLPQRS KYKNPIRCQH TSACRWQDAP AEGIHFDCII PLPINPYQLP PSGGACCSTT  600
QASASAKDGG NGLQIPKPLE MYSPPCSAAA SSQGHCFAVG ANQLASLDLA MDFDEPILFP  660
VHNASLQEGI QFYNPTGDTQ LSRNMSIDKC LKGSERKGSG EGSSLLHSQE ETGEMPQREL  720
SMEHAGEKAG DADASREEYV HVRAKRGQAT NSHSLAERFR REKINERMKL LQDLVPGCNK  780
ITGKAMMLDE IINYVQSLQR QVEFLSMKLS TISPELNSDL DLQDILCSQD ARSTFLGCSP  840
RLSNAHPNLY RAAQQRLSPP GFYGSLCVPN PADVHMTRTV HLASFPQQRG LIWDEELRNI  900
APAGFASDAA GTSSLENSDS MKVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631331.10.0PREDICTED: F-box protein SKIP22
TrEMBLA0A0E0KAX10.0A0A0E0KAX1_ORYPU; Uncharacterized protein
STRINGBGIOSGA011171-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-46bHLH family protein